Distributional Diagnosis and Calibration with Negative Controls for Outcome-wide Real-world Evidence.

Glucagon-like peptide-1 receptor agonists (GLP-1RAs) have been linked to heterogeneous, potentially pleiotropic effects across organ systems, motivating outcome-wide comparative risk profiling in real-world data. A central challenge in such analyses is residual bias that remains after adjustment for observed confounders, which can distort effect estimates and mis-calibrate uncertainty. We present distributional diagnosis and calibration (DC), which uses panels of negative control outcomes (NCOs) to diagnose residual bias and calibrate uncertainty. DC evaluates null behavior via p -value uniformity and empirical coverage across NCOs, and uses the empirical distribution of NCO effect estimates to calibrate confidence intervals for prespecified primary outcomes. DC is modular: it can wrap around commonly used causal inference methods and operates directly on summary statistics, supporting collaborative research under data-sharing constraints. Using electronic health records from a large U.S. clinical research network (152.7 million patients), we compared GLP-1RAs with sodium-glucose cotransporter 2 inhibitors across 15 prespecified outcomes spanning cardiovascular, mental health, and genitourinary domains using four causal estimators. Across outcomes and methods, DC diagnostics revealed substantial and method-dependent residual systematic error. DC calibration attenuated systematic error signals observed in negative controls and yielded more stable, better-calibrated estimates for clinical outcomes, supporting DC as a practical strategy to strengthen the credibility of outcome-wide real-world CER.

The contents are solely the responsibility of the authors and do not necessarily represent the official views of, or an endorsement by, Food and Drug Administration (FDA)/Department of Health and Human Services (HHS) or the U.S. Government.
Mental Health
Care/Management

Authors

Wang Wang, Zhang Zhang, Lei Lei, Lu Lu, Zhang Zhang, Jian Jian, Zhu Zhu, Hu Hu, Chu Chu, Chen Chen, Suchard Suchard, Ryan Ryan, Hripcsak Hripcsak, Asch Asch, Lu Lu, Yu Yu, Schuemie Schuemie, Qiu Qiu, Chen Chen
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